I have been looking for a diagram on how to hook up the batteries, battery switch, fuse box and such. I found this which I think is exactly how I was thinking of doing it.
They are recommending a breaker close to the battery for the positive wire that is heading to the helm fuse box. Are they meaning something like this.
Also it is showing a wire connecting the two batteries on the negative side. Also on the battery cut off switch it has 3 posts. Post 1, post 2 and common. I understand post one and two are for the positive wires from battery one and two I am guessing the common post is always hot wether the switch is in the one, two or both positions.