Re: pontoon corrosion
Welcome. I do think you should use paint stripper. I have used aircraft paint stripper working in the body shops. It works very good but it's very toxic.
For the rust, use a red scotchbrite wheel on an angle grinder. They work really well for digging the rust out of pits. They can eat up the aluminum though so if you do it that way, just get the feel of how much is just enough to elimjnate the visual corrosion.
There is also a chemical rust preventative that is made for coating the surface after rust has been removed. I beleive it's made by Rustoleum and it is in a small white squeeze bottle. Not an aerosol.
If you find a very badly pitted area, use a small lightweight body work hammer with a pointed end to just lightly tap the spot. Real light though. You will know if the rust is engrained too badly in the aluminum by the way it feels soft with the tapping of the hammer and it will also carry more of a squashing sound then a ping when you tap on it. If it feels soft, cut it out to just a bit beyond the soft spot and patch it, otherwise it will continue to spread wether you sand it off or not.
If the rusted spots can just be sanded clean of surface corrosion, then just do that and wipe on the rust preventative, prime and repaint it. I have used the rust preventative wipe for a rusted old dirtbike restore. I had it for about 3 years before I sold it and not a bit of the rust resurfaced. I would definatly use it again.
Good luck.