Better to ask and not need the answer, then the other way around

Which is why I asked....
If you strip, you'll have to Zinc Chromate, or Self Etch primer the bare aluminum, after it's prepped. There are several aluminum boat and paint topics, so there's lots of info on prep and painting.
Is the bead blaster familiar w/ stripping paint off aluminum? Actual blasting sand may damage the surface if not done carefully.
Are you painting it at home? Will it mostly be a trailered boat, not slipped for more then a couple days at a time?
Get a comfy chair and dig in. There's a lot of great tin boat building over in the
Starcraft forum, so check it out too.