Just a guess, but how vigorously did you roll out the glass to make sure you didn't have an layer of poly between the old glass and new?
If I'm not clear on this, what I am poking at is that if you didn't roll out the glass vigorously to remove excess resin, then there could be a layer of too much resin between the old glass hull and the new glass mat. Resin itself isn't very strong, so what you could be seeing is the failure of the resin between layers.
The extra resin applied before the mat doesn't have anywhere to soak into like it does on the fresh new wood (i.e., transom).
Just a thought.