As I said in post #10, the new harness does not have integrated battery cables, like your original did. Of course, I have no idea what you have now, after your last post stated that the original system was gutted.
If you somehow use the new boat wiring harness, it will power your gauges and starter solenoid and choke, but nothing else. You will need battery cables from the starting battery to the motor ground and starter solenoid. Power to the new boat harness will come from a connection between the new boat harness and there battery cable at the starter solenoid.
Power for the trolling motor should be hard wired to the deep cycle battery with the appropriate fuses.
If you took an original wiring diagram from your motor, plus a wiring diagram that matches your new boat wiring harness, you could make an interconnection diagram. I predict that most of the wires will match up.
Your new boat harness has power (red), ground (black), choke(Yellow/black), starter solenoid(yellow/red), Tach signal(grey), ign power(purple), ignition killer wire(black/yellow) and an overheat buzzer(tan/blue). The external brown wire is for temp gauge.