We ended up buying The carpet for the decking in precut rolls, it was cheaper by about half from getting the carpet cut off the big rolls at Lowes. We used carpet glue and a spray adhesive to hold the edges on the metal parts where the carpet was folded over like in the live well area.
On the decking we used a staple gun to hold the folded over edges to to put tension on the carpet and allow the glue to dry.
It was a bit challenging to cut the plywood to fit as the taper of the boat made for curved edges. We also had to account for the 1/8 of and inch of carpet overlap. The side of the bass tracker boats are aluminum and have foam pieces shoved up under to give the boat boyancy should it fill with water. We had to replace the foam under the decking as it was water logged and moldy in spots. I ended up cutting the foam pieces using a circular saw and it worked out very well.