Re: Replaced Fuel Pump Diaphram - Will this affect mixture?
Just for a lark, try pulling the distributor cap down and see if it's very dirty inside. I've seen cases of rough idling/misfiring due to "trash in the cap" which causes arcing to the wrong set of contacts inside the cap. You can use some carb cleaner to flush out the cap if it's full of carbon dust etc.
Also check the spring-loaded carbon contact in the middle of the cap; if it's not free to move, or is pushed back in the cap, it can't make full contact with the rotor. Seen quite a few that were gummed up pretty bad and had to be pulled out/cleaned.
Now, if you don't have a distributor (I forgot in your original post you said it's a '76 which should have ADI ign), you might be having issues with the stator.
If you have (4) coils on the port side of the motor and the CDI box mounted on the stbd side, you have ADI (Alternator Driven Ign).
Big Batch of Problems with ADI stators, I just got in a '76 850 with running problems; when I checked the stator it had the correct resistances, and plenty of spark.
After starting and idling for 5 minutes, it lost spark and quit. Checked the stator and the resistances were way different. Needless to say it's getting a new one!
CDI/Rapair replacements are around $105 at
www.boatfix.com, don't think I've seen them cheaper anywhere else. P/N is 174-5454 K1, Merc P/N is 398- 5454A26.
You can check the stator out with an ohmmeter; the low-speed windings (the blue and blue with white-stripe wires) should be 5700-8000 ohms. The hi-speed windings (red and red with white-stripe wires) should be 56-76 ohms. If the resistance on either winding is out-of-spec the stator is bad. Disconnected the (4) wires from the CDI box before testing. The stator should also be replaced if any low-speed or high-speed windings' wire is grounded.
The back side of the fuel pump sees crankcase vacuum/pressure so the soot is representative of the combustion quality in the motor. Since you noted the area was dry, it's not likely fuel is being sucked into the crankcase past the pumps. Maybe your motor's problem is just coincidental to the fuel pump refurb; ign probls might be masking the real problem.
Otherwise I'd look to issues with the carbs (i.e., leaking fuel inlet needle or float adjustment) if you can't sort out the rich-running/soot problem.
HTH........ed