Re: need advice on mounting rod holders
How big of fish are you going to be catching, are you going to use them for trolling or just still fishing? I wouldn't use self tapping screws as I bet the aluminum gunwales are not too thick. On my Crestliner I made 10" long backing plates out of 1/8 or 3/16 aluminum and then through bolted them down. Eh, I guess you could use the self tapping screws, and if they loosen or pull you could figure out something different, thru-bolting or the gripserts F431 mentioned. After mounting the rod holders, put your heaviest rod in the rod holder, pull on the fishing line (until the drag slips) from in back of the boat, or straight down and see if the gunwales are deforming, IE: aluminum bending. The whole gunwale moving isn't a biggie, but if it's denting the aluminum that would be bad.
FWIW, I had the bases screwed down on my old fiberglass boat with #14 screws and they were secure,,, but the glass was about 1/4" thick.