I think you'll find, maybe after looking at a couple of pods, that the transom is generally about even with the top of the pod - which mounts under the floor. You don't see much variance from pod to pod. In any case, they'll be quite a bit lower than the one you have....
Are you the DIY sort of person, or would you hire this out? If you have the time, inclination, tools, and a place to work on it, this would not be a bad DIY project. A few more pics may draw some ideas on how what you have could be changed - or suggestions on why going with a used or commercially available pod might be a better plan. -Al