Re: Fiberglassed some of my stringers yesterday...
If you want good strength, you'll need to sand it down and re-do it. Sorry.
Post some pics... most likely you're missing a fillet or have one too small. Fiberglass can't turn corners very easily, thicker cloth is stiffer than thinner, although mat is a bit better. Where it turns a corner sharply it has a tendency to form bubbles, sometimes even after it's been pressed into place for curing.
Stringers are one area you definitely don't want bubbles, except maybe a couple on top or somewhere non critical.
The strength of the fiberglass laminate comes from an even pairing of glass (or other) fibers and resin, and depends on a uniform mix of the two to transfer force and weight around easily. A bubble forms a spot where there's no support, and it makes for cracks and delamination, or worse provides a spot for water to collect.
Even filling bubbles with resin just makes them look good, they're not really strong because they still don't have the right mix of glass and resin, and they don't have a uniform structure.
Erik