I got a chance to take it out again, and both problems are occurring on the same cylinder so I am assuming it is the same issue causing each. This time however, instead of missing all of the time above around 2500 rpms, it would begin to fire again around 4000 rpms and above.
I had tested the compression and the numbers were:
90 100
100 98 (this is the cylinder with the problems)
92 95
These numbers seem okay for this motor but wanted a second opinion.
I will do the spark test when I get the chance, but I need to get a spark tester.
Thanks for the help!