The symptoms you describe are classic lean idle mixtures. Not removing the idle mixture scres and cleaning those passages left accumulated crud restricting fuel flow at idle. The additional back pressure of the water column in the exhaust once launched increases the motors demand for idle fuel.
Idle mixtures will need to be perfected once on the water running IN Forward gear slowly adjust each carb to achieve the Best Idle Speed. Because it is a 2 stroke and no accelerator pump it needs even MORE fuel for crisp acceleration otherwise it will hesitate, cough or bog. Almost another 1/8 turn fatter than Best Idle Speed.
Idle mixtures will need to be perfected once on the water running IN Forward gear slowly adjust each carb to achieve the Best Idle Speed. Because it is a 2 stroke and no accelerator pump it needs even MORE fuel for crisp acceleration otherwise it will hesitate, cough or bog. Almost another 1/8 turn fatter than Best Idle Speed.