Re: run/charge switch
A RUN/CHARGE switch does two things. In the RUN position it connects the batteries in series to provide 24 volts to the troller receptacle. In the CHARGE position, it breaks the series connection so the batteries can be charged through the troller receptacle or directly at the batteries. Since your troller also has a 12/24 switch, the troller plug probably has three wires in it (red-orange-black). Red=24V, Orange=12V and black=ground. On he boat side, the batteries can be wired in two different ways. You may have four wires (two red and two black from each battery) going to bow panel. Or, it may have three wires. Check this carefully and let us know exactly how it's wired. But to answer your original question, one of the batteries may be bad which will suck the life out of the good one in a parallel configuration (CHARGE position) and prevent full power in the RUN position. If the bad battery is providing 12V for 12V operation, obviously power will be down. You should also check and clean all connections, have the batteries load tested, and make sure they are topped off with distilled water if necessary.