Re: 1993 mercury 60 hp 2 cycle no spark bottom cylinder
Reading what I think you said. You removed CDI#3 from it's location and put in slot #2 and it worked. You didn't say that #2 in slot #3 didn't work either directing us to an input wiring problem to #3. I am assuming that #2 wouldn't work in slot #3.
Looking at the CDI #3 slot input wiring:
Black: ground
Black/yellow stripe: Trigger kill....from the ignition switch and all 3 CDI's are fed in parallel from one wire from the control box. Really doubt this has anything to do with your problem.
White: Trigger from trigger coils under the flywheel. Fires the CDI producing the high voltage.
Green/white stripe: Voltage source to fill up the storage capacitor in the CDI that delivers the energy to the coil to produce the high voltage and fire the plug. Without this input there is no energy to send to the plug to fire it when the trigger says go!
Slot #1 has a separate wire from the stator (under the flywheel).
Slots 2 and 3 are paralleled off another separate wire from the stator. If #2 CDI position is working and #3 isn't, there is an opening (open circuit, corroded connection not making contact, pinched wire that cut through the conductor and opened it) in the green/white stripe wire from #3 to where it joins the green/white stripe wire from #2.
I would assume that you don't have to go up under the flywheel to find it. I'd assume the union is very near both CDI's. Cut the tie wraps and trace that wire from both CDI's till you get to the junction. Inspect it for corrosion and also inspect it's connection on the #3 CDI connector.
From the symptom given I think you will find your smoking gun. Really, there isn't anything else it could be. I'm sitting here looking at the maint manual wiring harness and that's all there is.
HTH,
Mark