I think you have done the tuning well.
When I tune I start at 1 1/4 turn out as a set point, warm it up and then start to turn the top carb mixscrew in 1/8 turn wait about 10 seconds then 1/8 in and so on until it starts to misfire due to lean mix. Note the setting.
Go back to 1 1/8 turn and then start to turn the screw out 1/8 wait 10 seconds and so on until it starts to load up due to to rich mix. Note the set point.
Then set the mixscrew at a midpoint.
op
Then the same procedure to mid and bottom carb.
After this you set the idle screw to 7-800 RPM in gear in water.
The clunking when shifting is normal and you should be resolute when shifting and snap into gear, not hesitate when shifting.
When cold start you use the cold start knob and pull it out then the throttle handle all way it goes forward. (it will stop really soon if the remote is correct adjusted)
Push the key in (choke) and turn key to start position. When it fires up drop the key, if the engine coughs give the key a short push to activate the choke.
You may give it some short pushes until it is warmed up.
When I tune I start at 1 1/4 turn out as a set point, warm it up and then start to turn the top carb mixscrew in 1/8 turn wait about 10 seconds then 1/8 in and so on until it starts to misfire due to lean mix. Note the setting.
Go back to 1 1/8 turn and then start to turn the screw out 1/8 wait 10 seconds and so on until it starts to load up due to to rich mix. Note the set point.
Then set the mixscrew at a midpoint.
op
Then the same procedure to mid and bottom carb.
After this you set the idle screw to 7-800 RPM in gear in water.
The clunking when shifting is normal and you should be resolute when shifting and snap into gear, not hesitate when shifting.
When cold start you use the cold start knob and pull it out then the throttle handle all way it goes forward. (it will stop really soon if the remote is correct adjusted)
Push the key in (choke) and turn key to start position. When it fires up drop the key, if the engine coughs give the key a short push to activate the choke.
You may give it some short pushes until it is warmed up.