Re: Flat bottom with weak transom
Your boat used to look like this before it was bastardized:
Your boat is only rated for a 35 hp. max, here's the specs for a 1648 Lowe jon:
http://www.loweboats.com/2014/jon-boats/L1648-Jon/
As I see it, you have 3 options:
1. Keep the motor and get another boat rated for that horse power. (best)
2. Keep the boat and get a smaller motor and build back the structural support that was removed. (second best)
3. Spend the money to modify and strengthen your boat and keep the same motor. (iffy)
Increasing your transom height and installing bigger braces may help a little bit, but your hull is still going to be weak and you will experience hull twist and flex which is going to make performance "squirrely" at best without adding more hull support.
I suggest modifying your transom as described above, build a full width bench seat where you seats are now, and adding at least another 4 feet of length to your front deck. Done properly, all of this should increase the performance and handling of your boat to a manageable level.