I would stick to two parts pour in foam if I were you. The impact resistance of it - and as a result, the structural support it provides - is not comparable to its alternatives.
No major caveats, straight forward process really. Estimate the volume of the compartment you want to fill using math or if it will get complicated, by pouring in water from known volumes. It is the same way we measure the cc of the combustion chamber of a cylinder head. Wait for a day, and specific time of day, that match at least yhe minimum recommend temperature by the manufacturing.
Prepare a mixing attachment on a drill and make a good use of it since good mixing is a key to successfull foaming.
If you measured your volume accurately, you can get away with one fill hole per compartment. If you want to be on the safe side and dont mind drilling a little more holes in the new deck, go for two holes per compartment and fill from the deep side and wait for the overflow from the shallow side (if applicable)
Mask off anything you dont want to clean and be ready with plenty of cleaning supplies and Acetone. This thing goes everywhere specifically where you dont want it. Best of luck