If you're interested in vinyl deck covering take a look at my build:
http://forums.iboats.com/forum/boat...-repair/521750-97-tracker-pro-deep-v-facelift
The only reason boat manufacturers put carpet in boats is because that's what everyone likes and the general boat buying public doesn't realize the disadvantages of carpet. Carpet absorbs and retains water/moisture, and even if the decking is sealed to prevent rot from the wet carpet it will still cause problems because of the retained moisture. The moisture in the carpet creates the perfect environment for growing mold and mildew.
I used to have a heck of a time with mildew in my boat when it had carpet in it, but when I changed over to all vinyl my mildew problem was solved. Water just sheds right off of the vinyl and goes down into the bilge to be drained out the bilge drain.
Now for that side console, save that thing and don't give or throw it away. Chances are you will be reinstalling it after a couple of trips operating a tiller.
To prevent listing distribute the heavy equipment in your boat according to how it will be used. If it will be mainly you fishing alone in the boat you can install the battery(s) and/or fuel tank on the port side to compensate for your weight on the starboard side.
One of the best things about restoring an old boat is that you can design it to fit your own practical needs.